STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106951094Uncharacterized protein. (542 aa)    
Predicted Functional Partners:
LOC106954507
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.832
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.832
ENSPLAP00000008880
Uncharacterized protein.
   
0.804
LOC106951349
Polypyrimidine tract binding protein 2b.
   
0.804
ptbp3
Polypyrimidine tract binding protein 3.
   
0.804
ptbp1
Polypyrimidine tract binding protein 1a.
   
0.804
LOC106937209
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.779
hnrnpu
Heterogeneous nuclear ribonucleoprotein Ub.
   
 0.754
HNRNPUL1
Heterogeneous nuclear ribonucleoprotein U like 1.
   
 0.754
ewsr1
EWS RNA-binding protein 1b.
   
 0.750
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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