Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106945231Transcription factor SOX. (341 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.670
sox5
SRY-box transcription factor 5.
   
 0.645
LOC106948175
POU domain protein.
    
 0.614
ENSPLAP00000000352
Transcription factor 7.
    
 0.607
LOC106937540
CTNNB1_binding domain-containing protein.
    
 0.607
lef1
Lymphoid enhancer-binding factor 1.
    
 0.596
LOC106953978
Uncharacterized protein.
    
 0.552
LOC106963833
Junction plakoglobin a.
    
 0.552
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
    
 
 0.541
LOC106962954
Transcription factor 7 like 1b.
    
 0.532
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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