LOC106947909 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106947909

Un-named hu7910. (679 aa)

Predicted Functional Partners:

LOC106947247

0.948

LOC106935502

0.948

ENSPLAP00000004892

0.917

LOC106934571

0.917

RYR3

0.917

ENSPLAP00000023040

0.917

LOC106960988

0.917

asph

0.900

LOC106947412

0.851

LOC106941889

0.821

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000004892	LOC106935502	ENSPLAP00000004892	ENSPLAP00000012642	Uncharacterized protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.757
ENSPLAP00000004892	LOC106941889	ENSPLAP00000004892	ENSPLAP00000003082	Uncharacterized protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.745
ENSPLAP00000004892	LOC106947247	ENSPLAP00000004892	ENSPLAP00000006009	Uncharacterized protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.757
ENSPLAP00000004892	LOC106947909	ENSPLAP00000004892	ENSPLAP00000003452	Uncharacterized protein.	Un-named hu7910.	0.917
ENSPLAP00000004892	LOC106960988	ENSPLAP00000004892	ENSPLAP00000025088	Uncharacterized protein.	Uncharacterized protein.	0.839
ENSPLAP00000004892	RYR3	ENSPLAP00000004892	ENSPLAP00000021172	Uncharacterized protein.	Ryanodine receptor 3.	0.939
ENSPLAP00000004892	asph	ENSPLAP00000004892	ENSPLAP00000013259	Uncharacterized protein.	Asp-B-Hydro_N domain-containing protein.	0.867
ENSPLAP00000023040	LOC106935502	ENSPLAP00000023040	ENSPLAP00000012642	Uncharacterized protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.757
ENSPLAP00000023040	LOC106941889	ENSPLAP00000023040	ENSPLAP00000003082	Uncharacterized protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.745
ENSPLAP00000023040	LOC106947247	ENSPLAP00000023040	ENSPLAP00000006009	Uncharacterized protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.757
ENSPLAP00000023040	LOC106947909	ENSPLAP00000023040	ENSPLAP00000003452	Uncharacterized protein.	Un-named hu7910.	0.917
ENSPLAP00000023040	RYR3	ENSPLAP00000023040	ENSPLAP00000021172	Uncharacterized protein.	Ryanodine receptor 3.	0.915
ENSPLAP00000023040	asph	ENSPLAP00000023040	ENSPLAP00000013259	Uncharacterized protein.	Asp-B-Hydro_N domain-containing protein.	0.867
LOC106934571	LOC106935502	ENSPLAP00000007519	ENSPLAP00000012642	Ryanodine receptor 2b (cardiac).	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.930
LOC106934571	LOC106941889	ENSPLAP00000007519	ENSPLAP00000003082	Ryanodine receptor 2b (cardiac).	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.745
LOC106934571	LOC106947247	ENSPLAP00000007519	ENSPLAP00000006009	Ryanodine receptor 2b (cardiac).	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.930
LOC106934571	LOC106947909	ENSPLAP00000007519	ENSPLAP00000003452	Ryanodine receptor 2b (cardiac).	Un-named hu7910.	0.917
LOC106934571	LOC106960988	ENSPLAP00000007519	ENSPLAP00000025088	Ryanodine receptor 2b (cardiac).	Uncharacterized protein.	0.902
LOC106934571	asph	ENSPLAP00000007519	ENSPLAP00000013259	Ryanodine receptor 2b (cardiac).	Asp-B-Hydro_N domain-containing protein.	0.867
LOC106935502	ENSPLAP00000004892	ENSPLAP00000012642	ENSPLAP00000004892	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Uncharacterized protein.	0.757