STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106941293Protocadherin 18a. (1142 aa)    
Predicted Functional Partners:
LOC106956981
Lysyl oxidase-like 2a.
    
 0.623
grem2
Gremlin 2, DAN family BMP antagonist a.
      
 0.590
rab3ip
RAB3A interacting protein (rabin3).
      
 0.590
fjx1
Four-jointed box kinase 1.
   
  0.566
lama4
Laminin, alpha 4.
   
  
 0.526
fat1
FAT atypical cadherin 1a.
    
 
0.519
fat2
FAT atypical cadherin 2.
    
 
0.519
ENSPLAP00000017424
ACAS_N domain-containing protein.
      
 0.517
LOC106952910
Acetoacetyl-CoA synthetase.
      
 0.517
LOC106954308
Uridine-cytidine kinase; Belongs to the uridine kinase family.
   
  0.463
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.