Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
rfx3Regulatory factor X, 3 (influences HLA class II expression). (760 aa)    
Predicted Functional Partners:
LOC106965124
Forkhead box J1b.
    
 
 0.831
ENSPLAP00000017372
Fork-head domain-containing protein.
    
 
 0.831
atr
ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family.
    
 
 0.796
btaf1
BTAF1 RNA polymerase II, B-TFIID transcription factor-associated.
    
   0.772
dmtf1
Cyclin D binding myb-like transcription factor 1.
    
   0.701
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
    
   0.687
myb
V-myb avian myeloblastosis viral oncogene homolog.
    
 
 0.667
BAZ1A
Bromodomain adjacent to zinc finger domain 1A.
    
 
 0.660
rfxap
Regulatory factor X-associated protein.
    
 
 0.657
nf1
Neurofibromin 1b.
      
 0.638
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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