brat1 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000004364	brat1	ENSPLAP00000004364	ENSPLAP00000003628	Phosphoprotein membrane anchor with glycosphingolipid microdomains 1.	Uncharacterized protein.	0.608
brap	brat1	ENSPLAP00000030369	ENSPLAP00000003628	BRCA1 associated protein.	Uncharacterized protein.	0.697
brap	brca1	ENSPLAP00000030369	ENSPLAP00000008625	BRCA1 associated protein.	Uncharacterized protein.	0.915
brat1	ENSPLAP00000004364	ENSPLAP00000003628	ENSPLAP00000004364	Uncharacterized protein.	Phosphoprotein membrane anchor with glycosphingolipid microdomains 1.	0.608
brat1	brap	ENSPLAP00000003628	ENSPLAP00000030369	Uncharacterized protein.	BRCA1 associated protein.	0.697
brat1	brca1	ENSPLAP00000003628	ENSPLAP00000008625	Uncharacterized protein.	Uncharacterized protein.	0.899
brat1	ints11	ENSPLAP00000003628	ENSPLAP00000029213	Uncharacterized protein.	Integrator complex subunit 11.	0.880
brat1	ints4	ENSPLAP00000003628	ENSPLAP00000004139	Uncharacterized protein.	Integrator complex subunit 4.	0.780
brat1	ints9	ENSPLAP00000003628	ENSPLAP00000016365	Uncharacterized protein.	Integrator complex subunit 9.	0.889
brat1	myb	ENSPLAP00000003628	ENSPLAP00000021836	Uncharacterized protein.	V-myb avian myeloblastosis viral oncogene homolog.	0.659
brat1	psmd2	ENSPLAP00000003628	ENSPLAP00000000329	Uncharacterized protein.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.573
brat1	tonsl	ENSPLAP00000003628	ENSPLAP00000012476	Uncharacterized protein.	Tonsoku-like, DNA repair protein.	0.685
brat1	wdr73	ENSPLAP00000003628	ENSPLAP00000001328	Uncharacterized protein.	WD repeat domain 73.	0.801
brca1	brap	ENSPLAP00000008625	ENSPLAP00000030369	Uncharacterized protein.	BRCA1 associated protein.	0.915
brca1	brat1	ENSPLAP00000008625	ENSPLAP00000003628	Uncharacterized protein.	Uncharacterized protein.	0.899
brca1	myb	ENSPLAP00000008625	ENSPLAP00000021836	Uncharacterized protein.	V-myb avian myeloblastosis viral oncogene homolog.	0.685
brca1	tonsl	ENSPLAP00000008625	ENSPLAP00000012476	Uncharacterized protein.	Tonsoku-like, DNA repair protein.	0.887
ints11	brat1	ENSPLAP00000029213	ENSPLAP00000003628	Integrator complex subunit 11.	Uncharacterized protein.	0.880
ints11	ints4	ENSPLAP00000029213	ENSPLAP00000004139	Integrator complex subunit 11.	Integrator complex subunit 4.	0.999
ints11	ints9	ENSPLAP00000029213	ENSPLAP00000016365	Integrator complex subunit 11.	Integrator complex subunit 9.	0.999