STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmbr1lLimb development membrane protein 1-like; Belongs to the LIMR family. (492 aa)    
Predicted Functional Partners:
setd1b
SET domain containing 1B, histone lysine methyltransferase a.
      
 0.551
shh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
 
   
 0.544
ihh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
 
   
 0.542
LOC106961420
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
 
   
 0.542
LOC106959288
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
 
   
 0.529
LOC106955354
IKAROS family zinc finger 4.
      
 0.523
LOC106959331
Si:dkey-69o16.5.
      
 0.517
zc3h15
Zinc finger CCCH-type containing 15.
      
 0.517
IKZF4
IKAROS family zinc finger 4.
      
 0.517
LOC106938734
Uncharacterized protein.
      
 0.510
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.