rlim protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rlim

Ring finger protein, LIM domain interacting. (660 aa)

Predicted Functional Partners:

rps27a

0.929

uba52

0.925

ENSPLAP00000015559

0.865

ube2d3

0.775

ube2d2

0.775

LOC106962957

0.775

LOC106952053

0.775

UBE2D1

0.775

LOC106946659

0.737

ENSPLAP00000001003

0.678

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000001003	ENSPLAP00000015559	ENSPLAP00000001003	ENSPLAP00000015559	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.592
ENSPLAP00000001003	LOC106946659	ENSPLAP00000001003	ENSPLAP00000019591	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2T (putative).	0.756
ENSPLAP00000001003	LOC106952053	ENSPLAP00000001003	ENSPLAP00000014876	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2D 3; Belongs to the ubiquitin-conjugating enzyme family.	0.756
ENSPLAP00000001003	LOC106962957	ENSPLAP00000001003	ENSPLAP00000006777	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2D 4 (putative); Belongs to the ubiquitin-conjugating enzyme family.	0.756
ENSPLAP00000001003	UBE2D1	ENSPLAP00000001003	ENSPLAP00000024252	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2D 1a; Belongs to the ubiquitin-conjugating enzyme family.	0.756
ENSPLAP00000001003	rlim	ENSPLAP00000001003	ENSPLAP00000003744	Ubiquitin-like domain-containing protein.	Ring finger protein, LIM domain interacting.	0.678
ENSPLAP00000001003	rps27a	ENSPLAP00000001003	ENSPLAP00000025723	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.996
ENSPLAP00000001003	uba52	ENSPLAP00000001003	ENSPLAP00000027495	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.592
ENSPLAP00000001003	ube2d2	ENSPLAP00000001003	ENSPLAP00000006231	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.	0.756
ENSPLAP00000001003	ube2d3	ENSPLAP00000001003	ENSPLAP00000000042	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.756
ENSPLAP00000015559	ENSPLAP00000001003	ENSPLAP00000015559	ENSPLAP00000001003	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.592
ENSPLAP00000015559	LOC106946659	ENSPLAP00000015559	ENSPLAP00000019591	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2T (putative).	0.860
ENSPLAP00000015559	LOC106952053	ENSPLAP00000015559	ENSPLAP00000014876	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2D 3; Belongs to the ubiquitin-conjugating enzyme family.	0.859
ENSPLAP00000015559	LOC106962957	ENSPLAP00000015559	ENSPLAP00000006777	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2D 4 (putative); Belongs to the ubiquitin-conjugating enzyme family.	0.859
ENSPLAP00000015559	UBE2D1	ENSPLAP00000015559	ENSPLAP00000024252	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2D 1a; Belongs to the ubiquitin-conjugating enzyme family.	0.859
ENSPLAP00000015559	rlim	ENSPLAP00000015559	ENSPLAP00000003744	Ubiquitin-like domain-containing protein.	Ring finger protein, LIM domain interacting.	0.865
ENSPLAP00000015559	rps27a	ENSPLAP00000015559	ENSPLAP00000025723	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.997
ENSPLAP00000015559	ube2d2	ENSPLAP00000015559	ENSPLAP00000006231	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.	0.859
ENSPLAP00000015559	ube2d3	ENSPLAP00000015559	ENSPLAP00000000042	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.859
LOC106946659	ENSPLAP00000001003	ENSPLAP00000019591	ENSPLAP00000001003	Ubiquitin-conjugating enzyme E2T (putative).	Ubiquitin-like domain-containing protein.	0.756