Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rlimRing finger protein, LIM domain interacting. (660 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.946
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.913
ENSPLAP00000015559
Ubiquitin-like domain-containing protein.
    
 0.858
ldb1
LIM-domain binding 1b.
    
 
 0.851
LOC106947875
LIM domain binding 2a.
    
 
 0.851
LOC106961067
LIM domain binding 1a.
    
 
 0.851
ubxn1
UBX domain protein 1.
   
 
 0.836
ube2d3
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.827
ube2d2
Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
    
 0.827
LOC106962957
Ubiquitin-conjugating enzyme E2D 4 (putative); Belongs to the ubiquitin-conjugating enzyme family.
    
 0.827
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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