STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmtf1Cyclin D binding myb-like transcription factor 1. (665 aa)    
Predicted Functional Partners:
LOC106953350
Transcription initiation factor TFIID subunit.
    
 0.771
polr1e
RNA polymerase I subunit E.
    
 0.748
twistnb
Uncharacterized protein.
    
 0.743
polr1a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.721
LOC106943900
RNA polymerase I and III subunit C.
    
  0.702
polr1c
RNA polymerase I and III subunit C.
    
  0.702
cd3eap
CD3e molecule, epsilon associated protein.
    
  0.694
polr1b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.677
btaf1
BTAF1 RNA polymerase II, B-TFIID transcription factor-associated.
   
 
 0.673
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
    
  0.665
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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