STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106950450Transient receptor potential cation channel, subfamily M, member 6. (1700 aa)    
Predicted Functional Partners:
LOC106955773
Protein kinase domain-containing protein.
     
 0.647
trpv4
Transient receptor potential cation channel, subfamily V, member 4; Belongs to the transient receptor (TC 1.A.4) family.
   
 
 0.625
LOC106951091
ANK_REP_REGION domain-containing protein; Belongs to the transient receptor (TC 1.A.4) family.
   
 
 0.585
LOC106956659
Transient receptor potential cation channel, subfamily V, member 1.
   
 
 0.585
LOC106956646
Transient receptor potential cation channel, subfamily V, member 1; Belongs to the transient receptor (TC 1.A.4) family.
   
 
 0.585
LOC106938008
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.576
ppp1cb
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.576
ppp1cc
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.576
LOC106956112
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.576
LOC106955979
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.576
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.