Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RAP1GDS1Rap1 GTPase-GDP dissociation stimulator 1. (429 aa)    
Predicted Functional Partners:
rasl10a
RAS-like, family 10, member A.
    
  0.835
LOC106961498
Uncharacterized protein.
    
   0.775
dnal1
Dynein, axonemal, light chain 1.
    
   0.763
fbxl4
F-box and leucine-rich repeat protein 4.
      
 0.664
LOC106947776
DIRAS family, GTP-binding RAS-like 1b.
    
 0.588
LOC106934804
Uncharacterized protein.
    
 0.588
rabl3
RAB, member of RAS oncogene family-like 3.
    
 
 0.581
ccdc126
Coiled-coil domain containing 126.
      
 0.576
LOC106964421
Ras homolog family member Ca.
    
  0.568
LOC106959654
Uncharacterized protein.
    
  0.568
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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