STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmgxb4HMG box domain containing 4a. (592 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
    
 
 0.691
LOC106957281
Zgc:103508.
    
 
 0.618
LOC106941039
MCF.2 cell line derived transforming sequence a.
      
 0.590
foxred2
FAD-dependent oxidoreductase domain containing 2.
      
 0.544
LOC106960031
Coiled-coil domain containing 30.
      
 0.544
ccar1
Cell division cycle and apoptosis regulator 1.
      
 0.542
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
    
 
 0.529
BPTF
Bromodomain PHD finger transcription factor.
    
   0.523
LOC106959599
Bromodomain PHD finger transcription factor.
    
   0.523
mcm5
DNA helicase; Belongs to the MCM family.
      
 0.520
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.