LOC106964665 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106964665

RAB3A interacting protein (rabin3)-like 1. (328 aa)

Predicted Functional Partners:

exoc5

0.900

exoc6

0.899

LOC106957673

0.899

exoc4

0.876

LOC106951783

0.868

LOC106939992

0.868

LOC106949674

0.868

LOC106949673

0.868

LOC106935857

0.868

LOC106936372

0.868

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106935857	LOC106936372	ENSPLAP00000019452	ENSPLAP00000026592	Uncharacterized protein.	Ras-related protein Rab-11A-like.	0.577
LOC106935857	LOC106939992	ENSPLAP00000019452	ENSPLAP00000008574	Uncharacterized protein.	RAB11a, member RAS oncogene family.	0.578
LOC106935857	LOC106951783	ENSPLAP00000019452	ENSPLAP00000005944	Uncharacterized protein.	RAB11a, member RAS oncogene family, like.	0.637
LOC106935857	LOC106957673	ENSPLAP00000019452	ENSPLAP00000025907	Uncharacterized protein.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.728
LOC106935857	LOC106964665	ENSPLAP00000019452	ENSPLAP00000003979	Uncharacterized protein.	RAB3A interacting protein (rabin3)-like 1.	0.868
LOC106935857	exoc4	ENSPLAP00000019452	ENSPLAP00000025999	Uncharacterized protein.	Exocyst complex component 4.	0.777
LOC106935857	exoc5	ENSPLAP00000019452	ENSPLAP00000003341	Uncharacterized protein.	Exocyst complex component 5.	0.752
LOC106935857	exoc6	ENSPLAP00000019452	ENSPLAP00000010873	Uncharacterized protein.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.728
LOC106936372	LOC106935857	ENSPLAP00000026592	ENSPLAP00000019452	Ras-related protein Rab-11A-like.	Uncharacterized protein.	0.577
LOC106936372	LOC106949673	ENSPLAP00000026592	ENSPLAP00000011177	Ras-related protein Rab-11A-like.	RAB11B, member RAS oncogene family, a.	0.577
LOC106936372	LOC106949674	ENSPLAP00000026592	ENSPLAP00000011152	Ras-related protein Rab-11A-like.	RAB11B, member RAS oncogene family, b.	0.577
LOC106936372	LOC106951783	ENSPLAP00000026592	ENSPLAP00000005944	Ras-related protein Rab-11A-like.	RAB11a, member RAS oncogene family, like.	0.663
LOC106936372	LOC106957673	ENSPLAP00000026592	ENSPLAP00000025907	Ras-related protein Rab-11A-like.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.728
LOC106936372	LOC106964665	ENSPLAP00000026592	ENSPLAP00000003979	Ras-related protein Rab-11A-like.	RAB3A interacting protein (rabin3)-like 1.	0.868
LOC106936372	exoc4	ENSPLAP00000026592	ENSPLAP00000025999	Ras-related protein Rab-11A-like.	Exocyst complex component 4.	0.777
LOC106936372	exoc5	ENSPLAP00000026592	ENSPLAP00000003341	Ras-related protein Rab-11A-like.	Exocyst complex component 5.	0.752
LOC106936372	exoc6	ENSPLAP00000026592	ENSPLAP00000010873	Ras-related protein Rab-11A-like.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.728
LOC106939992	LOC106935857	ENSPLAP00000008574	ENSPLAP00000019452	RAB11a, member RAS oncogene family.	Uncharacterized protein.	0.578
LOC106939992	LOC106949673	ENSPLAP00000008574	ENSPLAP00000011177	RAB11a, member RAS oncogene family.	RAB11B, member RAS oncogene family, a.	0.578
LOC106939992	LOC106949674	ENSPLAP00000008574	ENSPLAP00000011152	RAB11a, member RAS oncogene family.	RAB11B, member RAS oncogene family, b.	0.578