STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDH18Cadherin 18; Cadherins are calcium-dependent cell adhesion proteins. (795 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.744
LOC106963833
Junction plakoglobin a.
    
 0.721
LOC106953978
Uncharacterized protein.
    
 0.692
ENSPLAP00000001719
Uncharacterized protein.
   
 0.674
ENSPLAP00000001734
Uncharacterized protein.
   
 0.674
ENSPLAP00000012899
Uncharacterized protein.
   
 0.674
CTNND1
Catenin delta 1.
   
 0.674
LOC106946188
Catenin (cadherin-associated protein), delta 1.
   
 0.674
ENSPLAP00000001432
Uncharacterized protein.
    
  0.656
ctnna1
Catenin (cadherin-associated protein), alpha 1.
    
  0.656
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.