rrbp1 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rrbp1

Ribosome binding protein 1a. (1133 aa)

Predicted Functional Partners:

hdlbp

0.941

LOC106945785

0.941

cep120

0.886

eef1g

0.832

ccdc191

0.801

ranbp2

0.760

ENSPLAP00000020292

0.742

ssr1

0.733

LOC106950638

0.725

cmc2

0.719

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000020292	rrbp1	ENSPLAP00000020292	ENSPLAP00000004012	Uncharacterized protein.	Ribosome binding protein 1a.	0.742
LOC106945785	eef1g	ENSPLAP00000005184	ENSPLAP00000031131	High density lipoprotein binding protein b.	Eukaryotic translation elongation factor 1 gamma; Belongs to the GST superfamily.	0.876
LOC106945785	rrbp1	ENSPLAP00000005184	ENSPLAP00000004012	High density lipoprotein binding protein b.	Ribosome binding protein 1a.	0.941
LOC106950638	eef1g	ENSPLAP00000000286	ENSPLAP00000031131	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Eukaryotic translation elongation factor 1 gamma; Belongs to the GST superfamily.	0.946
LOC106950638	rrbp1	ENSPLAP00000000286	ENSPLAP00000004012	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Ribosome binding protein 1a.	0.725
ccdc191	rrbp1	ENSPLAP00000019969	ENSPLAP00000004012	Coiled-coil domain containing 191.	Ribosome binding protein 1a.	0.801
cep120	ranbp2	ENSPLAP00000002065	ENSPLAP00000009580	Centrosomal protein 120.	RAN binding protein 2.	0.494
cep120	rrbp1	ENSPLAP00000002065	ENSPLAP00000004012	Centrosomal protein 120.	Ribosome binding protein 1a.	0.886
cmc2	rrbp1	ENSPLAP00000019734	ENSPLAP00000004012	COX assembly mitochondrial protein.	Ribosome binding protein 1a.	0.719
eef1g	LOC106945785	ENSPLAP00000031131	ENSPLAP00000005184	Eukaryotic translation elongation factor 1 gamma; Belongs to the GST superfamily.	High density lipoprotein binding protein b.	0.876
eef1g	LOC106950638	ENSPLAP00000031131	ENSPLAP00000000286	Eukaryotic translation elongation factor 1 gamma; Belongs to the GST superfamily.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.946
eef1g	hdlbp	ENSPLAP00000031131	ENSPLAP00000004302	Eukaryotic translation elongation factor 1 gamma; Belongs to the GST superfamily.	High density lipoprotein binding protein a.	0.875
eef1g	ranbp2	ENSPLAP00000031131	ENSPLAP00000009580	Eukaryotic translation elongation factor 1 gamma; Belongs to the GST superfamily.	RAN binding protein 2.	0.741
eef1g	rrbp1	ENSPLAP00000031131	ENSPLAP00000004012	Eukaryotic translation elongation factor 1 gamma; Belongs to the GST superfamily.	Ribosome binding protein 1a.	0.832
hdlbp	eef1g	ENSPLAP00000004302	ENSPLAP00000031131	High density lipoprotein binding protein a.	Eukaryotic translation elongation factor 1 gamma; Belongs to the GST superfamily.	0.875
hdlbp	rrbp1	ENSPLAP00000004302	ENSPLAP00000004012	High density lipoprotein binding protein a.	Ribosome binding protein 1a.	0.941
ranbp2	cep120	ENSPLAP00000009580	ENSPLAP00000002065	RAN binding protein 2.	Centrosomal protein 120.	0.494
ranbp2	eef1g	ENSPLAP00000009580	ENSPLAP00000031131	RAN binding protein 2.	Eukaryotic translation elongation factor 1 gamma; Belongs to the GST superfamily.	0.741
ranbp2	rrbp1	ENSPLAP00000009580	ENSPLAP00000004012	RAN binding protein 2.	Ribosome binding protein 1a.	0.760
rrbp1	ENSPLAP00000020292	ENSPLAP00000004012	ENSPLAP00000020292	Ribosome binding protein 1a.	Uncharacterized protein.	0.742