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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC106936681RAB42, member RAS oncogene family a. (218 aa)    
Predicted Functional Partners:
c9orf72
Zgc:100846.
    
  0.917
LOC106948330
UDENN FLCN/SMCR8-type domain-containing protein.
    
 0.909
wdr41
WD repeat domain 41.
    
  0.909
smcr8
Smith-Magenis syndrome chromosome region, candidate 8a.
    
 0.909
ENSPLAP00000000035
Uncharacterized protein.
     
  0.900
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.682
LOC106942307
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.682
rab14
Uncharacterized protein.
    
  0.681
LOC106935339
Uncharacterized protein.
    
  0.681
ENSPLAP00000019989
Uncharacterized protein.
    
 0.676
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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