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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zfp36l1Zinc finger protein 36, C3H type-like 1a. (359 aa)    
Predicted Functional Partners:
mapkapk2
MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily.
    
 0.939
ENSPLAP00000029707
Sb:cb81.
  
  
 
0.906
LOC106953934
Zgc:114130.
  
  
 
0.898
zfp36l2
Zinc finger protein 36, C3H type-like 2.
  
  
 
0.890
xrn1
5'-3' exoribonuclease 1.
    
 0.884
dcp2
Decapping mRNA 2.
   
 0.853
exosc8
Exosome component 8.
    
  0.852
exosc1
Exosome component 1.
     
 0.809
dis3
DIS3 exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family.
     
 0.782
cnot1
CCR4-NOT transcription complex, subunit 1.
    
 
 0.748
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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