Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
raver2Ribonucleoprotein, PTB-binding 2. (881 aa)    
Predicted Functional Partners:
cnot11
CCR4-NOT transcription complex, subunit 11.
   
   0.963
cnot10
CCR4-NOT transcription complex, subunit 10.
    
   0.934
GADD45B-2
Growth arrest and DNA damage inducible beta.
    
   0.927
ENSPLAP00000008880
Uncharacterized protein.
   
 0.883
LOC106951349
Polypyrimidine tract binding protein 2b.
   
 0.883
ptbp3
Polypyrimidine tract binding protein 3.
   
 0.883
ptbp1
Polypyrimidine tract binding protein 1a.
   
 0.883
LOC106952875
CCR4-NOT transcription complex, subunit 7.
    
 
 0.849
LOC106943239
CCR4-NOT transcription complex, subunit 8.
    
 
 0.849
cnot1
CCR4-NOT transcription complex, subunit 1.
    
   0.839
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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