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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106956601KxDL motif containing 1. (185 aa)    
Predicted Functional Partners:
rnf4
RING-type domain-containing protein.
    
   0.842
rpl32
Ribosomal protein L32.
   
   0.833
adrm1
RPN13_C domain-containing protein.
    
 
 0.831
borcs6
Si:dkey-72l14.4.
   
 
 0.824
rps27a
Ribosomal protein S27a.
    
  0.824
LOC106953469
Ribosomal protein L26.
   
  0.700
rpl13a
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
    
  0.696
LOC106949972
Ribosomal protein L36A; Belongs to the eukaryotic ribosomal protein eL42 family.
    
  0.696
rpl10
Ribosomal protein L10.
    
  0.696
rpl8
Ribosomal protein L8.
   
  0.692
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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