Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ush1cUsher syndrome 1C. (835 aa)    
Predicted Functional Partners:
LOC106949104
Usher syndrome 1Ga (autosomal recessive).
   
 0.976
anks4b
Ankyrin repeat and sterile alpha motif domain containing 4B.
   
 0.976
ush1g
Usher syndrome 1Gb (autosomal recessive).
   
 0.976
LOC106958449
Uncharacterized protein.
   
 
 0.966
cdh23
Cadherin-related 23.
   
 
 0.966
LOC106937443
Protocadherin-related 15a.
   
 
 0.950
LOC106949363
Uncharacterized protein.
   
 
 0.939
LOC106943058
CA domain-containing protein.
   
 
 0.939
ENSPLAP00000021185
Uncharacterized protein.
    
 
 0.912
LOC106941666
Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.
    
 
 0.888
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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