STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ush1cUsher syndrome 1C. (835 aa)    
Predicted Functional Partners:
LOC106949104
Usher syndrome 1Ga (autosomal recessive).
    
 0.947
anks4b
Ankyrin repeat and sterile alpha motif domain containing 4B.
    
 0.937
ush1g
Usher syndrome 1Gb (autosomal recessive).
    
 0.937
LOC106958449
Uncharacterized protein.
   
 
 0.927
cdh23
Cadherin-related 23.
   
 
 0.927
LOC106937443
Protocadherin-related 15a.
   
 
 0.813
ENSPLAP00000026585
Uncharacterized protein.
   
 0.798
LOC106959425
Myosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.798
ift88
Intraflagellar transport 88 homolog.
    
 0.761
plekhh3
Pleckstrin homology, MyTH4 and FERM domain containing H3.
   
 0.740
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.