Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
LOC106945811Armadillo repeat-containing protein 1. (270 aa)    
Predicted Functional Partners:
mtfr1l
Mitochondrial fission regulator 1-like.
    
 
 0.834
dnajc11
DnaJ (Hsp40) homolog, subfamily C, member 11a.
    
 
 0.797
LOC106952757
J domain-containing protein.
    
 
 0.797
ENSPLAP00000005190
Metaxin 2.
   
  
 0.723
mrps25
Mitochondrial ribosomal protein S25.
   
    0.599
LOC106935676
Citrate lyase beta like.
    
 
 0.579
apex2
DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends.
   
  
 0.537
LOC106938999
SAMM50 sorting and assembly machinery component.
      
 0.535
LOC106960210
Sorting and assembly machinery component 50 homolog, like.
      
 0.535
nsmce2
NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.
      
 0.519
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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