ENSPLAP00000004147 protein (Poecilia latipinna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPLAP00000004147

Uncharacterized protein. (334 aa)

Predicted Functional Partners:

LOC106955146

0.539

lrtm2

0.539

slit1

0.539

ENSPLAP00000012053

0.539

ENSPLAP00000013825

0.539

lrrc3c

0.539

slit2

0.539

ENSPLAP00000021859

0.539

LOC106962499

0.539

LOC106937682

0.539

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000004147	ENSPLAP00000012053	ENSPLAP00000004147	ENSPLAP00000012053	Uncharacterized protein.	Uncharacterized protein.	0.539
ENSPLAP00000004147	ENSPLAP00000013825	ENSPLAP00000004147	ENSPLAP00000013825	Uncharacterized protein.	LRRNT domain-containing protein.	0.539
ENSPLAP00000004147	ENSPLAP00000021859	ENSPLAP00000004147	ENSPLAP00000021859	Uncharacterized protein.	Nyctalopin.	0.539
ENSPLAP00000004147	LOC106937682	ENSPLAP00000004147	ENSPLAP00000025264	Uncharacterized protein.	Slit homolog 1b (Drosophila).	0.539
ENSPLAP00000004147	LOC106955146	ENSPLAP00000004147	ENSPLAP00000002742	Uncharacterized protein.	Leucine rich repeat containing 3.	0.539
ENSPLAP00000004147	LOC106962499	ENSPLAP00000004147	ENSPLAP00000024888	Uncharacterized protein.	LRRNT domain-containing protein.	0.539
ENSPLAP00000004147	lrrc3c	ENSPLAP00000004147	ENSPLAP00000017057	Uncharacterized protein.	Leucine rich repeat containing 3Ca.	0.539
ENSPLAP00000004147	lrtm2	ENSPLAP00000004147	ENSPLAP00000004200	Uncharacterized protein.	Leucine-rich repeats and transmembrane domains 2a.	0.539
ENSPLAP00000004147	slit1	ENSPLAP00000004147	ENSPLAP00000004954	Uncharacterized protein.	Slit homolog 1a (Drosophila).	0.539
ENSPLAP00000004147	slit2	ENSPLAP00000004147	ENSPLAP00000018905	Uncharacterized protein.	Slit homolog 2 (Drosophila).	0.539
ENSPLAP00000012053	ENSPLAP00000004147	ENSPLAP00000012053	ENSPLAP00000004147	Uncharacterized protein.	Uncharacterized protein.	0.539
ENSPLAP00000013825	ENSPLAP00000004147	ENSPLAP00000013825	ENSPLAP00000004147	LRRNT domain-containing protein.	Uncharacterized protein.	0.539
ENSPLAP00000021859	ENSPLAP00000004147	ENSPLAP00000021859	ENSPLAP00000004147	Nyctalopin.	Uncharacterized protein.	0.539
LOC106937682	ENSPLAP00000004147	ENSPLAP00000025264	ENSPLAP00000004147	Slit homolog 1b (Drosophila).	Uncharacterized protein.	0.539
LOC106955146	ENSPLAP00000004147	ENSPLAP00000002742	ENSPLAP00000004147	Leucine rich repeat containing 3.	Uncharacterized protein.	0.539
LOC106962499	ENSPLAP00000004147	ENSPLAP00000024888	ENSPLAP00000004147	LRRNT domain-containing protein.	Uncharacterized protein.	0.539
lrrc3c	ENSPLAP00000004147	ENSPLAP00000017057	ENSPLAP00000004147	Leucine rich repeat containing 3Ca.	Uncharacterized protein.	0.539
lrtm2	ENSPLAP00000004147	ENSPLAP00000004200	ENSPLAP00000004147	Leucine-rich repeats and transmembrane domains 2a.	Uncharacterized protein.	0.539
slit1	ENSPLAP00000004147	ENSPLAP00000004954	ENSPLAP00000004147	Slit homolog 1a (Drosophila).	Uncharacterized protein.	0.539
slit2	ENSPLAP00000004147	ENSPLAP00000018905	ENSPLAP00000004147	Slit homolog 2 (Drosophila).	Uncharacterized protein.	0.539