Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
mmp15Matrix metallopeptidase 15b. (658 aa)    
Predicted Functional Partners:
LOC106964102
TIMP metallopeptidase inhibitor 2a.
    
 0.959
LOC106936699
TIMP metallopeptidase inhibitor 2b.
    
 0.959
LOC106948985
Furin (paired basic amino acid cleaving enzyme) a; Belongs to the peptidase S8 family.
    
 0.891
furin
Furin (paired basic amino acid cleaving enzyme) b; Belongs to the peptidase S8 family.
    
 0.891
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.805
lum
Lumican.
   
 0.753
timp4
TIMP metallopeptidase inhibitor 4, tandem duplicate 2.
    
 0.716
ENSPLAP00000013666
Myogenin.
    
 
 0.705
rpl13
60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.
      
 0.659
LOC106961061
MYCN proto-oncogene, bHLH transcription factor.
      
 0.642
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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