Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106938803Fibronectin type-III domain-containing protein. (481 aa)    
Predicted Functional Partners:
LOC106938309
ADP-ribosylation factor-like 14 effector protein.
    
 
 0.965
LOC106938375
SET domain bifurcated histone lysine methyltransferase 1b.
   
 0.945
LOC106943293
Uncharacterized protein.
   
 0.945
LOC106960878
Uncharacterized protein.
   
 0.945
sp1
Sp1 transcription factor.
   
 0.913
LOC106957365
Methyl-CpG binding domain protein 1b.
    
 0.910
morc2
MORC family CW-type zinc finger 2.
     
 0.855
LOC106963886
Von Hippel-Lindau tumor suppressor.
    
   0.848
gtf2e1
General transcription factor IIE, polypeptide 1, alpha.
    
 
 0.774
LOC106954887
Transcription activation suppressor b.
   
 
 0.757
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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