STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106963155ELKS/RAB6-interacting/CAST family member 1a. (928 aa)    
Predicted Functional Partners:
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 
 0.864
LOC106951829
Uncharacterized protein.
    
 
 0.864
yeats4
YEATS domain containing 4.
    
 
 0.616
dcp1b
Decapping mRNA 1B.
    
 
 0.616
LOC106949934
Regulating synaptic membrane exocytosis 1a.
    
 
 0.609
LOC106945350
Regulating synaptic membrane exocytosis 3.
    
 
 0.609
cpsf6
Cleavage and polyadenylation specific factor 6.
      
 0.589
ENSPLAP00000003344
PDZ domain-containing protein.
    
 
 0.578
ENSPLAP00000003352
C2 domain-containing protein.
    
 
 0.578
rims4
Regulating synaptic membrane exocytosis 4.
    
 
 0.562
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.