Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc71Si:dkeyp-87e7.4. (355 aa)    
Predicted Functional Partners:
chtop
Chromatin target of PRMT1a.
      
 0.666
TMEM158
Transmembrane protein 158 (gene/pseudogene).
      
 0.653
fam207a
Family with sequence similarity 207 member A.
   
  
 0.611
ftsj3
pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
      
 0.577
LOC106945781
Zinc finger and BTB domain containing 4.
  
 
 
 0.555
exosc4
Exosome component 4.
   
  
 0.551
LOC106952289
Retinoblastoma binding protein 4.
    
   0.543
ENSPLAP00000014870
CAF1C_H4-bd domain-containing protein.
    
   0.543
tmem98
Transmembrane protein 98.
      
 0.540
LOC106937644
Peptidase inhibitor 15a; Belongs to the CRISP family.
      
 0.521
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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