STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106941244Homeobox protein. (298 aa)    
Predicted Functional Partners:
lrtm2
Leucine-rich repeats and transmembrane domains 2a.
    
 
 0.595
LOC106939030
Vitamin K epoxide reductase complex, subunit 1.
      
 0.593
LOC106939268
Cartilage oligomeric matrix protein.
      
 0.593
snx16
Sorting nexin 16.
      
 0.589
LOC106958307
T-box transcription factor 4.
   
 
 0.560
ripk2
Receptor-interacting serine-threonine kinase 2.
      
 0.556
MAN1B1
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
      
 0.546
cnot3
CCR4-NOT transcription complex, subunit 3a.
      
 0.546
acacb
Acetyl-CoA carboxylase beta.
      
 0.545
has2
Hyaluronan synthase 2.
      
 0.543
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.