Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPLAP00000004353Uncharacterized protein. (137 aa)    
Predicted Functional Partners:
LOC106948821
CCHC-type domain-containing protein.
    
 0.780
dis3l2
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.
    
 
 0.761
papolg
Poly(A) polymerase gamma.
   
 
 0.742
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.633
sympk
Symplekin.
    
 0.622
LOC106941684
Uncharacterized protein.
    
 
 0.594
ENSPLAP00000021914
C2H2-type domain-containing protein.
 
      0.578
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
    
  0.576
sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 
 0.554
cpsf3
Cleavage and polyadenylation specific factor 3.
    
 0.541
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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