cask protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cask

Uncharacterized protein; Belongs to the MAGUK family. (920 aa)

Predicted Functional Partners:

LOC106935289

0.955

lin7c

0.953

lin7a

0.953

ENSPLAP00000014380

0.953

LOC106961236

0.946

LOC106958146

0.946

LOC106939923

0.940

LOC106936171

0.940

LOC106957537

0.927

ENSPLAP00000022735

0.918

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000014380	LOC106935289	ENSPLAP00000014380	ENSPLAP00000019191	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	0.816
ENSPLAP00000014380	LOC106936171	ENSPLAP00000014380	ENSPLAP00000016595	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	Uncharacterized protein.	0.767
ENSPLAP00000014380	LOC106939923	ENSPLAP00000014380	ENSPLAP00000009900	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	Uncharacterized protein.	0.767
ENSPLAP00000014380	LOC106958146	ENSPLAP00000014380	ENSPLAP00000009640	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	Amyloid beta (A4) precursor protein-binding, family A, member 2a.	0.816
ENSPLAP00000014380	LOC106961236	ENSPLAP00000014380	ENSPLAP00000002374	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	Amyloid beta (A4) precursor protein-binding, family A, member 2b.	0.816
ENSPLAP00000014380	cask	ENSPLAP00000014380	ENSPLAP00000004397	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	Uncharacterized protein; Belongs to the MAGUK family.	0.953
ENSPLAP00000022735	cask	ENSPLAP00000022735	ENSPLAP00000004397	ANK_REP_REGION domain-containing protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.918
LOC106935289	ENSPLAP00000014380	ENSPLAP00000019191	ENSPLAP00000014380	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.816
LOC106935289	cask	ENSPLAP00000019191	ENSPLAP00000004397	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	Uncharacterized protein; Belongs to the MAGUK family.	0.955
LOC106935289	lin7a	ENSPLAP00000019191	ENSPLAP00000008895	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.816
LOC106935289	lin7c	ENSPLAP00000019191	ENSPLAP00000005566	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.816
LOC106936171	ENSPLAP00000014380	ENSPLAP00000016595	ENSPLAP00000014380	Uncharacterized protein.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.767
LOC106936171	cask	ENSPLAP00000016595	ENSPLAP00000004397	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.940
LOC106936171	lin7a	ENSPLAP00000016595	ENSPLAP00000008895	Uncharacterized protein.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.767
LOC106936171	lin7c	ENSPLAP00000016595	ENSPLAP00000005566	Uncharacterized protein.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.767
LOC106939923	ENSPLAP00000014380	ENSPLAP00000009900	ENSPLAP00000014380	Uncharacterized protein.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.767
LOC106939923	cask	ENSPLAP00000009900	ENSPLAP00000004397	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.940
LOC106939923	lin7a	ENSPLAP00000009900	ENSPLAP00000008895	Uncharacterized protein.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.767
LOC106939923	lin7c	ENSPLAP00000009900	ENSPLAP00000005566	Uncharacterized protein.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.767
LOC106957537	cask	ENSPLAP00000027323	ENSPLAP00000004397	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	Uncharacterized protein; Belongs to the MAGUK family.	0.927