Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106937823Uncharacterized protein. (867 aa)    
Predicted Functional Partners:
PPP6C
Serine/threonine-protein phosphatase.
    
 0.937
LOC106956189
Serine/threonine-protein phosphatase.
    
 0.937
usp10
Ubiquitin carboxyl-terminal hydrolase.
   
   0.765
LOC106953873
ANK_REP_REGION domain-containing protein.
    
 0.678
ENSPLAP00000001223
Ankyrin repeat domain 28b.
    
 0.678
ENSPLAP00000001237
Ankyrin repeat domain 28b.
    
 0.678
ankrd44
Ankyrin repeat domain 44.
    
 0.678
LOC106962862
ANK_REP_REGION domain-containing protein.
    
 0.678
ENSPLAP00000012601
ANK_REP_REGION domain-containing protein.
    
 0.678
LOC106954717
ANK_REP_REGION domain-containing protein.
    
 0.678
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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