ENSPLAP00000004487 protein (Poecilia latipinna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPLAP00000004487

Copine domain-containing protein. (107 aa)

Predicted Functional Partners:

LOC106941496

0.849

ENSPLAP00000021994

0.817

rnaseh2b

0.651

rnaseh2a

0.534

LOC106958625

0.534

pik3c3

0.523

ENSPLAP00000010783

0.472

ENSPLAP00000014018

0.472

pi4kb

0.462

LOC106941236

0.462

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000004487	ENSPLAP00000010783	ENSPLAP00000004487	ENSPLAP00000010783	Copine domain-containing protein.	Uncharacterized protein.	0.472
ENSPLAP00000004487	ENSPLAP00000014018	ENSPLAP00000004487	ENSPLAP00000014018	Copine domain-containing protein.	Uncharacterized protein.	0.472
ENSPLAP00000004487	ENSPLAP00000021994	ENSPLAP00000004487	ENSPLAP00000021994	Copine domain-containing protein.	C2 domain-containing protein.	0.817
ENSPLAP00000004487	LOC106941236	ENSPLAP00000004487	ENSPLAP00000021948	Copine domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.462
ENSPLAP00000004487	LOC106941496	ENSPLAP00000004487	ENSPLAP00000028982	Copine domain-containing protein.	C2 domain-containing protein.	0.849
ENSPLAP00000004487	LOC106958625	ENSPLAP00000004487	ENSPLAP00000014915	Copine domain-containing protein.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.534
ENSPLAP00000004487	pi4kb	ENSPLAP00000004487	ENSPLAP00000016124	Copine domain-containing protein.	Phosphatidylinositol 4-kinase beta; Belongs to the PI3/PI4-kinase family.	0.462
ENSPLAP00000004487	pik3c3	ENSPLAP00000004487	ENSPLAP00000030684	Copine domain-containing protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.523
ENSPLAP00000004487	rnaseh2a	ENSPLAP00000004487	ENSPLAP00000012555	Copine domain-containing protein.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.534
ENSPLAP00000004487	rnaseh2b	ENSPLAP00000004487	ENSPLAP00000025056	Copine domain-containing protein.	Ribonuclease H2, subunit B.	0.651
ENSPLAP00000010783	ENSPLAP00000004487	ENSPLAP00000010783	ENSPLAP00000004487	Uncharacterized protein.	Copine domain-containing protein.	0.472
ENSPLAP00000010783	ENSPLAP00000021994	ENSPLAP00000010783	ENSPLAP00000021994	Uncharacterized protein.	C2 domain-containing protein.	0.472
ENSPLAP00000010783	LOC106941496	ENSPLAP00000010783	ENSPLAP00000028982	Uncharacterized protein.	C2 domain-containing protein.	0.472
ENSPLAP00000014018	ENSPLAP00000004487	ENSPLAP00000014018	ENSPLAP00000004487	Uncharacterized protein.	Copine domain-containing protein.	0.472
ENSPLAP00000014018	ENSPLAP00000021994	ENSPLAP00000014018	ENSPLAP00000021994	Uncharacterized protein.	C2 domain-containing protein.	0.472
ENSPLAP00000014018	LOC106941496	ENSPLAP00000014018	ENSPLAP00000028982	Uncharacterized protein.	C2 domain-containing protein.	0.472
ENSPLAP00000021994	ENSPLAP00000004487	ENSPLAP00000021994	ENSPLAP00000004487	C2 domain-containing protein.	Copine domain-containing protein.	0.817
ENSPLAP00000021994	ENSPLAP00000010783	ENSPLAP00000021994	ENSPLAP00000010783	C2 domain-containing protein.	Uncharacterized protein.	0.472
ENSPLAP00000021994	ENSPLAP00000014018	ENSPLAP00000021994	ENSPLAP00000014018	C2 domain-containing protein.	Uncharacterized protein.	0.472
ENSPLAP00000021994	LOC106941236	ENSPLAP00000021994	ENSPLAP00000021948	C2 domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.462