arrdc1 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

arrdc1

Arrestin domain containing 1b. (436 aa)

Predicted Functional Partners:

vps37a

0.858

LOC106960917

0.829

wwp1

0.795

wwp2

0.795

LOC106952138

0.789

ENSPLAP00000026412

0.789

ENSPLAP00000026430

0.789

nedd4l

0.754

nedd4

0.754

zmym2

0.748

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000026412	arrdc1	ENSPLAP00000026412	ENSPLAP00000004522	Uncharacterized protein.	Arrestin domain containing 1b.	0.789
ENSPLAP00000026412	nedd4	ENSPLAP00000026412	ENSPLAP00000010117	Uncharacterized protein.	E3 ubiquitin-protein ligase.	0.524
ENSPLAP00000026412	nedd4l	ENSPLAP00000026412	ENSPLAP00000005036	Uncharacterized protein.	E3 ubiquitin-protein ligase.	0.524
ENSPLAP00000026412	wwp1	ENSPLAP00000026412	ENSPLAP00000023679	Uncharacterized protein.	WW domain containing E3 ubiquitin protein ligase 1.	0.870
ENSPLAP00000026412	wwp2	ENSPLAP00000026412	ENSPLAP00000029483	Uncharacterized protein.	E3 ubiquitin-protein ligase.	0.870
ENSPLAP00000026430	arrdc1	ENSPLAP00000026430	ENSPLAP00000004522	HECT domain-containing protein.	Arrestin domain containing 1b.	0.789
ENSPLAP00000026430	nedd4	ENSPLAP00000026430	ENSPLAP00000010117	HECT domain-containing protein.	E3 ubiquitin-protein ligase.	0.524
ENSPLAP00000026430	nedd4l	ENSPLAP00000026430	ENSPLAP00000005036	HECT domain-containing protein.	E3 ubiquitin-protein ligase.	0.524
ENSPLAP00000026430	wwp1	ENSPLAP00000026430	ENSPLAP00000023679	HECT domain-containing protein.	WW domain containing E3 ubiquitin protein ligase 1.	0.870
ENSPLAP00000026430	wwp2	ENSPLAP00000026430	ENSPLAP00000029483	HECT domain-containing protein.	E3 ubiquitin-protein ligase.	0.870
LOC106952138	arrdc1	ENSPLAP00000012251	ENSPLAP00000004522	E3 ubiquitin-protein ligase.	Arrestin domain containing 1b.	0.789
LOC106952138	nedd4	ENSPLAP00000012251	ENSPLAP00000010117	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.524
LOC106952138	nedd4l	ENSPLAP00000012251	ENSPLAP00000005036	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.524
LOC106952138	wwp1	ENSPLAP00000012251	ENSPLAP00000023679	E3 ubiquitin-protein ligase.	WW domain containing E3 ubiquitin protein ligase 1.	0.870
LOC106952138	wwp2	ENSPLAP00000012251	ENSPLAP00000029483	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.870
LOC106960917	arrdc1	ENSPLAP00000027881	ENSPLAP00000004522	Potassium channel tetramerization domain containing 2.	Arrestin domain containing 1b.	0.829
arrdc1	ENSPLAP00000026412	ENSPLAP00000004522	ENSPLAP00000026412	Arrestin domain containing 1b.	Uncharacterized protein.	0.789
arrdc1	ENSPLAP00000026430	ENSPLAP00000004522	ENSPLAP00000026430	Arrestin domain containing 1b.	HECT domain-containing protein.	0.789
arrdc1	LOC106952138	ENSPLAP00000004522	ENSPLAP00000012251	Arrestin domain containing 1b.	E3 ubiquitin-protein ligase.	0.789
arrdc1	LOC106960917	ENSPLAP00000004522	ENSPLAP00000027881	Arrestin domain containing 1b.	Potassium channel tetramerization domain containing 2.	0.829