STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arrdc1Arrestin domain containing 1b. (436 aa)    
Predicted Functional Partners:
LOC106944734
Thioredoxin; Belongs to the thioredoxin family.
    
 0.777
LOC106944735
Thioredoxin; Belongs to the thioredoxin family.
    
 0.777
txn2
Thioredoxin 2.
    
 0.686
ENSPLAP00000014192
NDK domain-containing protein.
    
 0.620
LOC106938355
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.607
ENSPLAP00000009866
Pyrin domain-containing protein.
    
 0.602
ENSPLAP00000012855
NACHT domain-containing protein.
    
 0.602
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 
 0.588
wwp2
E3 ubiquitin-protein ligase.
    
 
 0.588
nedd4l
E3 ubiquitin-protein ligase.
    
 
 0.573
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.