Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106941222Uncharacterized protein. (162 aa)    
Predicted Functional Partners:
LOC106960538
Transmembrane protein 79a.
    
   0.805
LOC106940905
Transmembrane protein 79b.
    
   0.805
ENSPLAP00000010160
Uncharacterized protein.
     
 0.725
sec62
SEC62 homolog, preprotein translocation factor.
      
 0.679
LOC106960403
ETHE1 persulfide dioxygenase.
      
 0.623
retreg1
Reticulophagy regulator 1.
      
 0.550
med20
Mediator of RNA polymerase II transcription subunit 20; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
      
 0.541
NEK9
NIMA related kinase 9.
      
 0.525
LOC106949813
Atlastin 3.
      
 0.524
sprtn
SprT-like N-terminal domain.
      
 0.509
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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