Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
s100pbpUncharacterized protein. (477 aa)    
Predicted Functional Partners:
LOC106935497
Family with sequence similarity 113.
    
   0.771
fam89a
Family with sequence similarity 89 member A.
      
 0.716
s100z
Protein S100; Belongs to the S-100 family.
      
 0.705
jmjd6
Jumonji domain containing 6, arginine demethylase and lysine hydroxylase.
      
 0.681
upb1
Ureidopropionase, beta.
      
 0.542
LOC106946189
Uncharacterized protein.
  
     0.446
LOC106954254
Proteasome subunit beta11b.
      
 0.425
ENSPLAP00000014296
Proteasome subunit beta.
      
 0.425
ENSPLAP00000022169
Uncharacterized protein.
  
     0.410
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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