STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPLAP00000004745Spartin b. (271 aa)    
Predicted Functional Partners:
spart
Spartin a.
  
  
 
0.901
ist1
IST1 factor associated with ESCRT-III.
    
 
 0.863
LOC106952138
E3 ubiquitin-protein ligase.
    
 
 0.632
ENSPLAP00000026412
Uncharacterized protein.
    
 
 0.632
ENSPLAP00000026430
HECT domain-containing protein.
    
 
 0.632
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 
 0.610
wwp2
E3 ubiquitin-protein ligase.
    
 
 0.610
tmsb4x
Thymosin beta; Plays an important role in the organization of the cytoskeleton. Binds to and sequesters actin monomers (G actin) and therefore inhibits actin polymerization. Belongs to the thymosin beta family.
      
 0.594
snx15
Sorting nexin 15.
      
 0.529
tor4a
Torsin family 4, member Aa.
      
 0.493
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.