STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106964613Ring finger protein 38. (730 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.905
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.869
ENSPLAP00000015559
Ubiquitin-like domain-containing protein.
    
 0.784
ube2k
Ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
    
 0.715
LOC106946840
Ubiquitin conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.715
ENSPLAP00000001003
Ubiquitin-like domain-containing protein.
    
 0.678
smad7
Mothers against decapentaplegic homolog.
   
 0.668
smad6
Mothers against decapentaplegic homolog.
   
 0.668
LOC106959732
Mothers against decapentaplegic homolog.
   
 0.668
ube2d3
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.643
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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