LOC106949308 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106949308

DDE_Tnp_1_7 domain-containing protein. (587 aa)

Predicted Functional Partners:

ENSPLAP00000028675

0.781

BET1L

0.695

naif1

0.674

LOC106948176

0.644

LOC106934904

0.597

ENSPLAP00000014192

0.577

gnl1

0.568

mysm1

0.550

sost

0.526

ENSPLAP00000015263

0.526

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BET1L	LOC106949308	ENSPLAP00000013512	ENSPLAP00000004775	Bet1 golgi vesicular membrane trafficking protein like.	DDE_Tnp_1_7 domain-containing protein.	0.695
BET1L	gnl1	ENSPLAP00000013512	ENSPLAP00000002060	Bet1 golgi vesicular membrane trafficking protein like.	Guanine nucleotide binding protein-like 1.	0.682
BET1L	naif1	ENSPLAP00000013512	ENSPLAP00000029731	Bet1 golgi vesicular membrane trafficking protein like.	Nuclear apoptosis inducing factor 1.	0.800
ENSPLAP00000014192	ENSPLAP00000028675	ENSPLAP00000014192	ENSPLAP00000028675	NDK domain-containing protein.	Uncharacterized protein.	0.577
ENSPLAP00000014192	LOC106948176	ENSPLAP00000014192	ENSPLAP00000012376	NDK domain-containing protein.	C18h3orf33 homolog (H. sapiens).	0.577
ENSPLAP00000014192	LOC106949308	ENSPLAP00000014192	ENSPLAP00000004775	NDK domain-containing protein.	DDE_Tnp_1_7 domain-containing protein.	0.577
ENSPLAP00000015263	LOC106949308	ENSPLAP00000015263	ENSPLAP00000004775	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	DDE_Tnp_1_7 domain-containing protein.	0.526
ENSPLAP00000015263	gnl1	ENSPLAP00000015263	ENSPLAP00000002060	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Guanine nucleotide binding protein-like 1.	0.569
ENSPLAP00000028675	ENSPLAP00000014192	ENSPLAP00000028675	ENSPLAP00000014192	Uncharacterized protein.	NDK domain-containing protein.	0.577
ENSPLAP00000028675	LOC106949308	ENSPLAP00000028675	ENSPLAP00000004775	Uncharacterized protein.	DDE_Tnp_1_7 domain-containing protein.	0.781
ENSPLAP00000028675	mysm1	ENSPLAP00000028675	ENSPLAP00000027471	Uncharacterized protein.	Myb-like, SWIRM and MPN domains 1.	0.550
LOC106934904	LOC106949308	ENSPLAP00000026359	ENSPLAP00000004775	SET domain and mariner transposase fusion gene.	DDE_Tnp_1_7 domain-containing protein.	0.597
LOC106934904	naif1	ENSPLAP00000026359	ENSPLAP00000029731	SET domain and mariner transposase fusion gene.	Nuclear apoptosis inducing factor 1.	0.745
LOC106948176	ENSPLAP00000014192	ENSPLAP00000012376	ENSPLAP00000014192	C18h3orf33 homolog (H. sapiens).	NDK domain-containing protein.	0.577
LOC106948176	LOC106949308	ENSPLAP00000012376	ENSPLAP00000004775	C18h3orf33 homolog (H. sapiens).	DDE_Tnp_1_7 domain-containing protein.	0.644
LOC106948176	mysm1	ENSPLAP00000012376	ENSPLAP00000027471	C18h3orf33 homolog (H. sapiens).	Myb-like, SWIRM and MPN domains 1.	0.550
LOC106949308	BET1L	ENSPLAP00000004775	ENSPLAP00000013512	DDE_Tnp_1_7 domain-containing protein.	Bet1 golgi vesicular membrane trafficking protein like.	0.695
LOC106949308	ENSPLAP00000014192	ENSPLAP00000004775	ENSPLAP00000014192	DDE_Tnp_1_7 domain-containing protein.	NDK domain-containing protein.	0.577
LOC106949308	ENSPLAP00000015263	ENSPLAP00000004775	ENSPLAP00000015263	DDE_Tnp_1_7 domain-containing protein.	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.526
LOC106949308	ENSPLAP00000028675	ENSPLAP00000004775	ENSPLAP00000028675	DDE_Tnp_1_7 domain-containing protein.	Uncharacterized protein.	0.781