Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC106949305RNA binding motif protein 24a. (249 aa)    
Predicted Functional Partners:
LOC106963374
RRM domain-containing protein.
   
 
 0.605
LOC106963608
RNA binding fox-1 homolog 2.
   
 
 0.605
ENSPLAP00000010571
RRM domain-containing protein.
  
   
 0.528
ENSPLAP00000007656
RRM domain-containing protein.
  
   
 0.513
ENSPLAP00000027396
annotation not available
  
   
 0.513
ENSPLAP00000001744
RRM domain-containing protein.
  
   
 0.436
TRA2B
Transformer 2 beta homolog.
  
   
 0.425
spo11
SPO11 initiator of meiotic double stranded breaks.
      
 0.424
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
  
   
 0.419
RBPMS
RNA binding protein, mRNA processing factor.
    
 
 0.415
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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