STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chmp1bChromatin modifying protein 1B. (199 aa)    
Predicted Functional Partners:
chmp2a
Charged multivesicular body protein 2A.
   
0.993
vta1
Vesicle (multivesicular body) trafficking 1.
    
 0.992
chmp3
Charged multivesicular body protein 3.
 
 
 0.974
LOC106955782
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.968
chmp2b
Charged multivesicular body protein 2Bb.
   
 0.968
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
   
 0.968
LOC106939979
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
   
 0.961
LOC106942951
Vacuolar protein sorting-associated protein 4A.
   
 0.961
ist1
IST1 factor associated with ESCRT-III.
    
 
 0.939
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
    
 0.925
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.