Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106939374Si:dkey-54n8.4. (296 aa)    
Predicted Functional Partners:
LOC106955617
F-box domain-containing protein.
      
 0.701
fbxl3
F-box and leucine-rich repeat protein 3a.
      
 0.701
dpy19l1
Dpy-19-like 1, like (H. sapiens).
      
 0.545
LOC106957904
Cytidine monophospho-N-acetylneuraminic acid hydroxylase.
      
 0.522
ENSPLAP00000010817
Cystatin C.
      
 0.516
LOC106937263
Uncharacterized protein.
      
 0.412
LOC106952219
Uncharacterized protein.
      
 0.412
ENSPLAP00000015150
A2M_recep domain-containing protein.
      
 0.412
ENSPLAP00000015166
Uncharacterized protein.
      
 0.412
LOC106960782
Uncharacterized protein.
      
 0.412
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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