LOC106964600 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106964600

Si:ch211-256m1.8. (1577 aa)

Predicted Functional Partners:

LOC106947145

0.958

LOC106938674

0.958

got2

0.958

GOT1

0.957

aspa

0.954

asns

0.953

asrgl1

0.936

LOC106957972

0.936

ENSPLAP00000006514

0.928

got1

0.927

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000006514	GOT1	ENSPLAP00000006514	ENSPLAP00000030858	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	Aspartate aminotransferase.	0.911
ENSPLAP00000006514	LOC106938674	ENSPLAP00000006514	ENSPLAP00000008656	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	Adenylosuccinate synthetase isozyme 2; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.950
ENSPLAP00000006514	LOC106947145	ENSPLAP00000006514	ENSPLAP00000007988	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.950
ENSPLAP00000006514	LOC106957972	ENSPLAP00000006514	ENSPLAP00000031354	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	Si:dkey-103j14.5.	0.907
ENSPLAP00000006514	LOC106964600	ENSPLAP00000006514	ENSPLAP00000005051	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	Si:ch211-256m1.8.	0.928
ENSPLAP00000006514	asns	ENSPLAP00000006514	ENSPLAP00000031654	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	Asparagine synthetase [glutamine-hydrolyzing].	0.950
ENSPLAP00000006514	aspa	ENSPLAP00000006514	ENSPLAP00000017647	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	Aspartoacylase.	0.929
ENSPLAP00000006514	asrgl1	ENSPLAP00000006514	ENSPLAP00000012238	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	Asparaginase like 1.	0.928
ENSPLAP00000006514	got1	ENSPLAP00000006514	ENSPLAP00000005642	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	Aspartate aminotransferase.	0.908
ENSPLAP00000006514	got2	ENSPLAP00000006514	ENSPLAP00000013232	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	Aspartate aminotransferase.	0.947
GOT1	ENSPLAP00000006514	ENSPLAP00000030858	ENSPLAP00000006514	Aspartate aminotransferase.	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	0.911
GOT1	LOC106938674	ENSPLAP00000030858	ENSPLAP00000008656	Aspartate aminotransferase.	Adenylosuccinate synthetase isozyme 2; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.935
GOT1	LOC106947145	ENSPLAP00000030858	ENSPLAP00000007988	Aspartate aminotransferase.	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.967
GOT1	LOC106957972	ENSPLAP00000030858	ENSPLAP00000031354	Aspartate aminotransferase.	Si:dkey-103j14.5.	0.941
GOT1	LOC106964600	ENSPLAP00000030858	ENSPLAP00000005051	Aspartate aminotransferase.	Si:ch211-256m1.8.	0.957
GOT1	asns	ENSPLAP00000030858	ENSPLAP00000031654	Aspartate aminotransferase.	Asparagine synthetase [glutamine-hydrolyzing].	0.967
GOT1	asrgl1	ENSPLAP00000030858	ENSPLAP00000012238	Aspartate aminotransferase.	Asparaginase like 1.	0.957
GOT1	got1	ENSPLAP00000030858	ENSPLAP00000005642	Aspartate aminotransferase.	Aspartate aminotransferase.	0.921
GOT1	got2	ENSPLAP00000030858	ENSPLAP00000013232	Aspartate aminotransferase.	Aspartate aminotransferase.	0.992
LOC106938674	ENSPLAP00000006514	ENSPLAP00000008656	ENSPLAP00000006514	Adenylosuccinate synthetase isozyme 2; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	0.950