LOC106962701 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HNRNPUL1	LOC106953185	ENSPLAP00000021227	ENSPLAP00000002431	Heterogeneous nuclear ribonucleoprotein U like 1.	RRM domain-containing protein.	0.833
HNRNPUL1	LOC106954507	ENSPLAP00000021227	ENSPLAP00000021081	Heterogeneous nuclear ribonucleoprotein U like 1.	Heterogeneous nuclear ribonucleoprotein K, like.	0.955
HNRNPUL1	LOC106960179	ENSPLAP00000021227	ENSPLAP00000029521	Heterogeneous nuclear ribonucleoprotein U like 1.	Uncharacterized protein.	0.866
HNRNPUL1	LOC106962701	ENSPLAP00000021227	ENSPLAP00000005074	Heterogeneous nuclear ribonucleoprotein U like 1.	Uncharacterized protein.	0.866
HNRNPUL1	LOC106965063	ENSPLAP00000021227	ENSPLAP00000027039	Heterogeneous nuclear ribonucleoprotein U like 1.	RRM domain-containing protein.	0.833
HNRNPUL1	hnrnpab	ENSPLAP00000021227	ENSPLAP00000023804	Heterogeneous nuclear ribonucleoprotein U like 1.	Heterogeneous nuclear ribonucleoprotein A/Ba.	0.866
HNRNPUL1	hnrnpd	ENSPLAP00000021227	ENSPLAP00000002902	Heterogeneous nuclear ribonucleoprotein U like 1.	Heterogeneous nuclear ribonucleoprotein D.	0.866
HNRNPUL1	hnrnpk	ENSPLAP00000021227	ENSPLAP00000031234	Heterogeneous nuclear ribonucleoprotein U like 1.	Heterogeneous nuclear ribonucleoprotein K.	0.955
HNRNPUL1	rbmx	ENSPLAP00000021227	ENSPLAP00000008003	Heterogeneous nuclear ribonucleoprotein U like 1.	RNA binding motif protein X-linked.	0.737
LOC106953185	HNRNPUL1	ENSPLAP00000002431	ENSPLAP00000021227	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein U like 1.	0.833
LOC106953185	LOC106954507	ENSPLAP00000002431	ENSPLAP00000021081	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein K, like.	0.995
LOC106953185	LOC106960179	ENSPLAP00000002431	ENSPLAP00000029521	RRM domain-containing protein.	Uncharacterized protein.	0.917
LOC106953185	LOC106962701	ENSPLAP00000002431	ENSPLAP00000005074	RRM domain-containing protein.	Uncharacterized protein.	0.861
LOC106953185	LOC106965063	ENSPLAP00000002431	ENSPLAP00000027039	RRM domain-containing protein.	RRM domain-containing protein.	0.901
LOC106953185	hnrnpab	ENSPLAP00000002431	ENSPLAP00000023804	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein A/Ba.	0.917
LOC106953185	hnrnpd	ENSPLAP00000002431	ENSPLAP00000002902	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein D.	0.917
LOC106953185	hnrnpk	ENSPLAP00000002431	ENSPLAP00000031234	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein K.	0.995
LOC106953185	hnrnpu	ENSPLAP00000002431	ENSPLAP00000020875	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein Ub.	0.982
LOC106953185	rbmx	ENSPLAP00000002431	ENSPLAP00000008003	RRM domain-containing protein.	RNA binding motif protein X-linked.	0.995
LOC106954507	HNRNPUL1	ENSPLAP00000021081	ENSPLAP00000021227	Heterogeneous nuclear ribonucleoprotein K, like.	Heterogeneous nuclear ribonucleoprotein U like 1.	0.955