Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdcd6ipProgrammed cell death 6 interacting protein. (807 aa)    
Predicted Functional Partners:
cep55
Centrosomal protein 55 like.
    
 
 0.990
chmp4b
Charged multivesicular body protein 4Bb.
    
 0.989
LOC106939601
Uncharacterized protein.
    
 0.989
LOC106961905
Charged multivesicular body protein 4C.
    
 0.989
LOC106963391
Syndecan binding protein (syntenin) 2.
    
 0.983
alg2
ALG2 alpha-1,3/1,6-mannosyltransferase.
    
 
 0.969
mvb12b
Multivesicular body subunit 12Ba.
     
 0.950
LOC106953916
Multivesicular body subunit 12Bb.
     
 0.950
LOC106945969
Uncharacterized protein.
     
 0.947
LOC106953701
Tumor susceptibility 101a.
   
 0.942
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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