STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPLAP00000005113Collagen, type XII, alpha 1b. (1807 aa)    
Predicted Functional Partners:
ENSPLAP00000020611
TROVE domain-containing protein.
    
  0.596
ENSPLAP00000020621
Uncharacterized protein.
    
  0.596
LOC106950009
Complement C1q C chain.
    
 
0.540
ENSPLAP00000005771
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
  0.506
LOC106938866
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
  0.503
col6a1
Collagen, type VI, alpha 1.
   
0.499
supt3h
Uncharacterized protein.
    
  0.497
lig1
DNA ligase.
    
 0.491
taf10
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
  0.482
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.478
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.