Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nkx2-1NK2 homeobox 1. (354 aa)    
Predicted Functional Partners:
foxa2
Forkhead box A2.
    
 
 0.688
LOC106959777
Fork-head domain-containing protein.
    
 
 0.584
crebbp
CREB binding protein a.
    
   0.520
LOC106942609
CREB binding protein b.
    
   0.520
LOC106947852
Forkhead box E3.
   
 0.485
gata5
GATA binding protein 5.
   
 0.470
LOC106964935
GATA binding protein 1a.
   
 0.470
gata4
GATA binding protein 4.
   
 0.470
gata6
GATA binding protein 6.
   
 0.470
klf5
Progesterone immunomodulatory binding factor 1.
    
 
 0.464
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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