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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPLAP00000005145RRM domain-containing protein. (101 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
   0.778
LOC106954507
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.749
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.749
LOC106937209
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.725
hnrnph1
Heterogeneous nuclear ribonucleoprotein H1.
   
 0.706
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.704
hnrnpu
Heterogeneous nuclear ribonucleoprotein Ub.
   
 0.695
HNRNPUL1
Heterogeneous nuclear ribonucleoprotein U like 1.
   
 0.695
srsf10
Serine and arginine rich splicing factor 10.
   
  0.687
LOC106949371
Serine and arginine rich splicing factor 9.
   
 0.686
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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