STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106945785High density lipoprotein binding protein b. (1268 aa)    
Predicted Functional Partners:
LOC106938462
Uncharacterized protein.
     
 0.794
LOC106938461
Uncharacterized protein.
     
 0.794
rack1
Receptor for activated C kinase 1.
   
 
 0.788
eef1g
Eukaryotic translation elongation factor 1 gamma; Belongs to the GST superfamily.
   
 
 0.707
dnajc2
DnaJ (Hsp40) homolog, subfamily C, member 2.
   
   0.673
wdr31
WD repeat domain 31.
   
 
 0.659
vars2
Valyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.574
sae1
SUMO1 activating enzyme subunit 1.
    
 
 0.553
ddx6
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.
   
 
 0.549
LOC106946892
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.549
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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