STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
man2c1Mannosidase, alpha, class 2C, member 1. (1022 aa)    
Predicted Functional Partners:
man2b1
Alpha-mannosidase.
     
0.952
LOC106938407
Glyco_hydro_38N domain-containing protein.
     
 0.935
man2b2
Alpha-mannosidase.
     
0.935
engase
Endo-beta-N-acetylglucosaminidase.
  
  
 0.838
mogs
Mannosyl-oligosaccharide glucosidase.
   
  
 0.807
LOC106936770
Mindbomb E3 ubiquitin protein ligase 2.
   
 
 0.720
ENSPLAP00000022509
Mindbomb E3 ubiquitin protein ligase 2.
   
 
 0.720
gne
Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.
  
  
 0.703
nbr1
NBR1 autophagy cargo receptor a.
   
 
 0.688
LOC106944133
Glyco_hydro_38N domain-containing protein.
     
0.674
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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