MSN protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MSN

FERM domain-containing protein. (589 aa)

Predicted Functional Partners:

ENSPLAP00000004375

0.921

LOC106948767

0.921

LOC106957429

0.916

slc9a3r1

0.916

LOC106948335

0.915

LOC106945923

0.915

actb

0.915

LOC106951939

0.908

slc9a1

0.905

podxl

0.553

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000004375	LOC106945923	ENSPLAP00000004375	ENSPLAP00000020516	Protein kinase domain-containing protein.	Uncharacterized protein.	0.410
ENSPLAP00000004375	LOC106948335	ENSPLAP00000004375	ENSPLAP00000008465	Protein kinase domain-containing protein.	Uncharacterized protein.	0.410
ENSPLAP00000004375	LOC106948767	ENSPLAP00000004375	ENSPLAP00000017311	Protein kinase domain-containing protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.900
ENSPLAP00000004375	LOC106951939	ENSPLAP00000004375	ENSPLAP00000020844	Protein kinase domain-containing protein.	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.	0.900
ENSPLAP00000004375	MSN	ENSPLAP00000004375	ENSPLAP00000005259	Protein kinase domain-containing protein.	FERM domain-containing protein.	0.921
ENSPLAP00000004375	actb	ENSPLAP00000004375	ENSPLAP00000022792	Protein kinase domain-containing protein.	Uncharacterized protein.	0.410
ENSPLAP00000004375	slc9a1	ENSPLAP00000004375	ENSPLAP00000020109	Protein kinase domain-containing protein.	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.	0.900
LOC106945923	ENSPLAP00000004375	ENSPLAP00000020516	ENSPLAP00000004375	Uncharacterized protein.	Protein kinase domain-containing protein.	0.410
LOC106945923	LOC106948335	ENSPLAP00000020516	ENSPLAP00000008465	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC106945923	LOC106948767	ENSPLAP00000020516	ENSPLAP00000017311	Uncharacterized protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.410
LOC106945923	MSN	ENSPLAP00000020516	ENSPLAP00000005259	Uncharacterized protein.	FERM domain-containing protein.	0.915
LOC106945923	actb	ENSPLAP00000020516	ENSPLAP00000022792	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC106948335	ENSPLAP00000004375	ENSPLAP00000008465	ENSPLAP00000004375	Uncharacterized protein.	Protein kinase domain-containing protein.	0.410
LOC106948335	LOC106945923	ENSPLAP00000008465	ENSPLAP00000020516	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC106948335	LOC106948767	ENSPLAP00000008465	ENSPLAP00000017311	Uncharacterized protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.410
LOC106948335	MSN	ENSPLAP00000008465	ENSPLAP00000005259	Uncharacterized protein.	FERM domain-containing protein.	0.915
LOC106948335	actb	ENSPLAP00000008465	ENSPLAP00000022792	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC106948767	ENSPLAP00000004375	ENSPLAP00000017311	ENSPLAP00000004375	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.900
LOC106948767	LOC106945923	ENSPLAP00000017311	ENSPLAP00000020516	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.410
LOC106948767	LOC106948335	ENSPLAP00000017311	ENSPLAP00000008465	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.410