rnf217 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rnf217

RBR-type E3 ubiquitin transferase. (584 aa)

Predicted Functional Partners:

ube2l3

0.965

rps27a

0.911

rbx1

0.878

LOC106934764

0.771

LOC106944743

0.771

ENSPLAP00000015559

0.764

uba52

0.764

LOC106953803

0.748

ube2n

0.748

eif4e2

0.747

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000015559	LOC106934764	ENSPLAP00000015559	ENSPLAP00000014478	Ubiquitin-like domain-containing protein.	NEDD8 ubiquitin like modifier.	0.920
ENSPLAP00000015559	LOC106944743	ENSPLAP00000015559	ENSPLAP00000017160	Ubiquitin-like domain-containing protein.	NEDD8 ubiquitin like modifier.	0.919
ENSPLAP00000015559	LOC106953803	ENSPLAP00000015559	ENSPLAP00000000428	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.949
ENSPLAP00000015559	rbx1	ENSPLAP00000015559	ENSPLAP00000013781	Ubiquitin-like domain-containing protein.	Ring-box 1, E3 ubiquitin protein ligase.	0.934
ENSPLAP00000015559	rnf217	ENSPLAP00000015559	ENSPLAP00000005265	Ubiquitin-like domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.764
ENSPLAP00000015559	rps27a	ENSPLAP00000015559	ENSPLAP00000025723	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.997
ENSPLAP00000015559	ube2l3	ENSPLAP00000015559	ENSPLAP00000024956	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.936
ENSPLAP00000015559	ube2n	ENSPLAP00000015559	ENSPLAP00000012140	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	0.949
LOC106934764	ENSPLAP00000015559	ENSPLAP00000014478	ENSPLAP00000015559	NEDD8 ubiquitin like modifier.	Ubiquitin-like domain-containing protein.	0.920
LOC106934764	LOC106953803	ENSPLAP00000014478	ENSPLAP00000000428	NEDD8 ubiquitin like modifier.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.588
LOC106934764	rbx1	ENSPLAP00000014478	ENSPLAP00000013781	NEDD8 ubiquitin like modifier.	Ring-box 1, E3 ubiquitin protein ligase.	0.985
LOC106934764	rnf217	ENSPLAP00000014478	ENSPLAP00000005265	NEDD8 ubiquitin like modifier.	RBR-type E3 ubiquitin transferase.	0.771
LOC106934764	rps27a	ENSPLAP00000014478	ENSPLAP00000025723	NEDD8 ubiquitin like modifier.	Ribosomal protein S27a.	0.955
LOC106934764	uba52	ENSPLAP00000014478	ENSPLAP00000027495	NEDD8 ubiquitin like modifier.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.953
LOC106934764	ube2l3	ENSPLAP00000014478	ENSPLAP00000024956	NEDD8 ubiquitin like modifier.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.893
LOC106934764	ube2n	ENSPLAP00000014478	ENSPLAP00000012140	NEDD8 ubiquitin like modifier.	Ubiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	0.588
LOC106944743	ENSPLAP00000015559	ENSPLAP00000017160	ENSPLAP00000015559	NEDD8 ubiquitin like modifier.	Ubiquitin-like domain-containing protein.	0.919
LOC106944743	LOC106953803	ENSPLAP00000017160	ENSPLAP00000000428	NEDD8 ubiquitin like modifier.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.588
LOC106944743	rbx1	ENSPLAP00000017160	ENSPLAP00000013781	NEDD8 ubiquitin like modifier.	Ring-box 1, E3 ubiquitin protein ligase.	0.985
LOC106944743	rnf217	ENSPLAP00000017160	ENSPLAP00000005265	NEDD8 ubiquitin like modifier.	RBR-type E3 ubiquitin transferase.	0.771